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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AAMP
ENSSSCG00000016189
ENSG00000127837
Angio associated migratory cell protein
Low tissue specificity
Detected in all
AAR2
ENSSSCG00000007315
ENSG00000131043
AAR2 splicing factor homolog
Low tissue specificity
Detected in all
AARSD1
ENSSSCG00000037979
ENSG00000266967
Alanyl-tRNA synthetase domain containing 1
Low tissue specificity
Detected in all
ABCF3
ENSSSCG00000028856
ENSG00000161204
ATP binding cassette subfamily F member 3
Low tissue specificity
Detected in all
ABHD10
ENSSSCG00000034450
ENSG00000144827
Abhydrolase domain containing 10
Tissue enhanced
Detected in all
adrenal gland:
36.2
ABHD17A
ENSSSCG00000013442
ENSG00000129968
Abhydrolase domain containing 17A
Low tissue specificity
Detected in all
ABHD4
ENSSSCG00000002051
ENSG00000100439
Abhydrolase domain containing 4
Tissue enhanced
Detected in all
testis:
61.8
ACAD11
ENSSSCG00000011629
ENSG00000240303
Acyl-CoA dehydrogenase family member 11
Tissue enhanced
Detected in all
liver:
52.6
ACADSB
ENSSSCG00000010723
ENSG00000196177
Acyl-CoA dehydrogenase short/branched chain
Tissue enhanced
Detected in all
liver:
85.0
ACAT1
ENSSSCG00000026153
ENSG00000075239
Acetyl-CoA acetyltransferase 1
Tissue enhanced
Detected in all
skeletal muscle:
70.4
ACO2
ENSSSCG00000000064
ENSG00000100412
Aconitate hydratase, mitochondrial precursor
Tissue enhanced
Detected in all
heart:
137.6
skeletal muscle:
155.2
ACOT13
ENSSSCG00000036411
ENSG00000112304
Acyl-coenzyme A thioesterase 13
Tissue enhanced
Detected in all
heart:
50.5
liver:
84.2
ACOX1
ENSSSCG00000017198
ENSG00000161533
Peroxisomal acyl-coenzyme A oxidase 1
Tissue enhanced
Detected in all
liver:
108.5
ACP2
ENSSSCG00000013242
ENSG00000134575
Lysosomal acid phosphatase precursor
Low tissue specificity
Detected in all
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACSL1
ENSSSCG00000015784
ENSG00000151726
Long-chain-fatty-acid--CoA ligase 1
Tissue enhanced
Detected in all
liver:
113.3
skeletal muscle:
63.6
ACSS3
ENSSSCG00000000939
ENSG00000111058
Acyl-CoA synthetase short chain family member 3
Low tissue specificity
Detected in all
ADHFE1
ENSSSCG00000006213
ENSG00000147576
Alcohol dehydrogenase, iron containing 1
Tissue enhanced
Detected in all
kidney:
35.5
ADPRHL2
ENSSSCG00000003634
ENSG00000116863
ADP-ribosylhydrolase like 2
Low tissue specificity
Detected in all
AFG1L
ENSSSCG00000040199
ENSG00000135537
AFG1 like ATPase
Low tissue specificity
Detected in all
AFG3L2
ENSSSCG00000022947
ENSG00000141385
AFG3 like matrix AAA peptidase subunit 2
Low tissue specificity
Detected in all
AGA
ENSSSCG00000015772
ENSG00000038002
Aspartylglucosaminidase
Low tissue specificity
Detected in all
AGL
ENSSSCG00000006872
ENSG00000162688
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase
Tissue enriched
Detected in all
skeletal muscle:
119.9
AGPAT1
ENSSSCG00000001435
ENSG00000204310
1-acyl-sn-glycerol-3-phosphate acyltransferase alpha
Tissue enhanced
Detected in all
adipose tissue:
142.4
AKIRIN1
ENSSSCG00000003652
ENSG00000174574
Akirin-1
Low tissue specificity
Detected in all
ALAD
ENSSSCG00000032787
ENSG00000148218
Aminolevulinate dehydratase
Tissue enhanced
Detected in all
liver:
98.4
ALDH18A1
ENSSSCG00000010495
ENSG00000059573
Aldehyde dehydrogenase 18 family member A1
Tissue enhanced
Detected in many
male glands:
70.8
ALDH6A1
ENSSSCG00000002357
ENSG00000119711
Aldehyde dehydrogenase 6 family member A1
Tissue enhanced
Detected in all
kidney:
85.2
ALDH7A1
ENSSSCG00000014247
ENSG00000164904
Aldehyde dehydrogenase 7 family member A1
Tissue enhanced
Detected in all
liver:
72.6
ALKBH3
ENSSSCG00000040937
ENSG00000166199
AlkB homolog 3, alpha-ketoglutaratedependent dioxygenase
Low tissue specificity
Detected in all
ALKBH7
ENSSSCG00000024254
ENSG00000125652
AlkB homolog 7
Low tissue specificity
Detected in all
AMACR
ENSSSCG00000016822
ENSG00000242110
Alpha-methylacyl-CoA racemase
Tissue enhanced
Detected in all
liver:
62.6
AMFR
ENSSSCG00000002822
ENSG00000159461
Autocrine motility factor receptor
Low tissue specificity
Detected in all
AMT
ENSSSCG00000022975
ENSG00000145020
Aminomethyltransferase, mitochondrial
Tissue enhanced
Detected in many
lens:
24.0
liver:
17.8
AMZ2
ENSSSCG00000017264
ENSG00000196704
Archaemetzincin-2
Tissue enhanced
Detected in all
lens:
63.4
AP2S1
ENSSSCG00000003106
ENSG00000042753
AP-2 complex subunit sigma isoform 2
Low tissue specificity
Detected in all
APIP
ENSSSCG00000013299
ENSG00000149089
APAF1 interacting protein
Tissue enhanced
Detected in all
male glands:
73.4
APLP2
ENSSSCG00000015244
ENSG00000084234
Amyloid beta precursor like protein 2
Low tissue specificity
Detected in all
ARSK
ENSSSCG00000014139
ENSG00000164291
Arylsulfatase family member K
Low tissue specificity
Detected in all
ASB8
ENSSSCG00000021024
ENSG00000177981
Ankyrin repeat and SOCS box containing 8
Low tissue specificity
Detected in all
ASNA1
ENSSSCG00000038776
ENSG00000198356
ArsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tissue enhanced
Detected in all
lens:
37.9
ATOX1
ENSSSCG00000026414
Copper transport protein ATOX1
Tissue enhanced
Detected in all
male glands:
134.0
ATP5F1A
ENSSSCG00000004499
ENSG00000152234
ATP synthase subunit alpha, mitochondrial
Tissue enhanced
Detected in all
heart:
121.2
skeletal muscle:
114.5
ATP5F1C
ENSSSCG00000034086
ENSG00000165629
ATP synthase F1 subunit gamma
Low tissue specificity
Detected in all
ATP5F1D
ENSSSCG00000035532
ENSG00000099624
ATP synthase F1 subunit delta
Low tissue specificity
Detected in all
ATP5F1E
ENSSSCG00000007524
ENSG00000124172
ATP synthase subunit epsilon, mitochondrial
Low tissue specificity
Detected in all
ATP5IF1
ENSSSCG00000027072
ENSG00000130770
ATPase inhibitor, mitochondrial
Low tissue specificity
Detected in all
ATP5MC2
ENSSSCG00000033368
ENSG00000135390
ATP synthase membrane subunit c locus 2
Low tissue specificity
Detected in all
ATP5MC3
ENSSSCG00000015973
ENSG00000154518
ATP synthase F(0) complex subunit C3, mitochondrial
Tissue enhanced
Detected in all
heart:
118.0
ATP5ME
ENSSSCG00000023903
ENSG00000169020
ATP synthase subunit e, mitochondrial
Tissue enhanced
Detected in all
heart:
144.2
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